Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs12761973 chr10:134440065 C/T 0.00036 170 24.62 26.62 2.23 KM Plot
PCPG rs12767009 chr10:29855290 C/T 4.75E-11 177 25.77 17.52 10.3 KM Plot
PCPG rs12767762 chr10:134443032 A/G 0.00036 170 24.62 26.62 2.23 KM Plot
PCPG rs12768540 chr10:29855377 T/A 4.75E-11 177 25.77 17.52 10.3 KM Plot
PCPG rs12770777 chr10:134409693 C/T 0.000327 172 24.85 25.92 2.23 KM Plot
PCPG rs12771180 chr10:29853891 C/T 6.74E-11 175 25.67 16.83 10.3 KM Plot
PCPG rs12775980 chr10:29859856 A/C 4.77E-7 178 7.48 17.77 25.77 KM Plot
PCPG rs12782110 chr10:134347785 A/G 4.09E-6 178 14.37 25.92 25.4 KM Plot
PCPG rs12783213 chr10:134402349 G/A 2.22E-16 170 25.08 28.45 2.23 KM Plot
PCPG rs12783312 chr10:134402543 C/T 0.000327 172 24.85 25.92 2.23 KM Plot
PCPG rs12811020 chr12:26890219 C/G 7.57E-6 177 24.5 28.47 5.97 KM Plot
PCPG rs12811022 chr12:26890222 C/G 7.57E-6 177 24.5 28.47 5.97 KM Plot
PCPG rs12812095 chr12:26869047 C/T 8.98E-5 177 24.3 27.87 5.97 KM Plot
PCPG rs12813817 chr12:26892605 G/C 0.000114 174 24.3 28.47 5.97 KM Plot
PCPG rs12816224 chr12:26896460 C/T 0.00011 174 24.5 27.83 5.97 KM Plot